Contents Menu Expand Light mode Dark mode Auto light/dark mode
hpc documentation
hpc documentation

Contents

  • Getting Started
  • Pryor (SSH Gateway)
  • Submitting Jobs
  • Modules
  • Slurm Array Jobs
  • SLURM
    • Slurm - Useful Commands
    • SLURM Tips
    • Temporary Directories
  • Singularity - Docker on the HPC
  • Conda
  • Conda Cheet Sheet
  • Linux Commands
  • Enviroment Variables
  • Applications
    • Stata
    • Running R on the Cluster
    • AlphaFold
Back to top

Applications#

We have a number of applications avaiable on the HPC, mostly accessible by loading the relevant module (see Modules section)

  • Stata
    • Stata Versions
    • Single do file script
    • Multiple DO files script
    • Single Do File, using SGE_TASK_ID to run multiple tasks
  • Running R on the Cluster
    • R CMD BATCH
    • Rcript
    • Parallel R
    • Installing R Packages via Conda
  • AlphaFold
Next
Stata
Previous
Enviroment Variables
Copyright © 2023, LSHTM
Made with Sphinx and @pradyunsg's Furo